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ONLINE COURSE – Introduction / Fundamentals of Bayesian Data Analysis statistics using R (FBDA01)

19th May 2021 - 20th May 2021

£275.00
ONLINE COURSE – Introduction / Fundamentals of Bayesian Data Analysis statistics using R (FBDA01)

Event Date

Thursday, May 19th, 2021

Course Format

This is a ‘LIVE COURSE’ – the instructor will be delivering lectures and coaching attendees through the accompanying computer practical’s via video link, a good internet connection is essential.

Course Program

TIME ZONE – UTC+2 – however all sessions will be recorded and made available allowing attendees from different time zones to follow a day behind with an additional 1/2 days support after the official course finish date (please email oliverhooker@prstatistics.com for full details or to discuss how we can accommodate you).

Course Details

Bayesian methods are now increasingly widely in data analysis across most scientific research fields. Given that Bayesian methods differ conceptually and theoretically from their classical statistical counterparts that are traditionally taught in statistics courses, many researchers do not have opportunities to learn the fundamentals of Bayesian methods, which makes using Bayesian data analysis in practice more challenging. The aim of this course is to provide a solid introduction to Bayesian methods, both theoretically and practically. We will teach the fundamental concepts of Bayesian inference and Bayesian modelling, including how Bayesian methods differ from their classical statistics counterparts, and show how to do Bayesian data analysis in practice in R. We begin with a gentle introduction to all the fundamental principles and concepts of Bayesian methods: the likelihood function, prior distributions, posterior distributions, high posterior density intervals, posterior predictive distributions, marginal likelihoods, Bayesian model selection, etc. We will do this using some simple probabilistic models that are easy to understand and easy to work with. We then proceed to more practically useful Bayesian analyses, specifically general linear models. For these analyses, we will use real world data sets, and carry out the analysis using the brms package in R, which is an excellent and powerful package for Bayesian analysis. In this coverage, we will also provide a brief introduction to Markov Chain Monte Carlo methods, although these will be described in more detail in subsequent Bayesian data analysis courses.

THIS IS ONE COURSE IN OUR R SERIES – LOOK OUT FOR COURSES WITH THE SAME COURSE IMAGE TO FIND MORE IN THIS SERIES

Intended Audiences

This course is aimed at anyone who is interested to learn and apply Bayesian data analysis in any area of science,
including the social sciences, life sciences, physical sciences. No prior experience or familiarity with Bayesian statistics
is required.

Venue

Delivered remotely

Course Information

Venue – Delivered remotely

Time zone – GMT+0

Availability – TBC

Duration – 2 days

Contact hours – Approx. 15 hours

ECT’s – Equal to 1 ECT’s

Language – English

Teaching Format

This course will be largely practical, hands-on, and workshop based. For each topic, there will first be some lecture style presentation, i.e., using slides or blackboard, to introduce and explain key concepts and theories. Then, we will cover how to perform the various statistical analyses using R. Any code that the instructor produces during these sessions will be uploaded to a publicly available GitHub site after each session. For the breaks between sessions, and between days, optional exercises will be provided. Solutions to these exercises and brief discussions of them will take place after each break.

The course will take place online using Zoom. On each day, the live video broadcasts will occur during UK local time (GMT+0) at:
• 12pm-2pm
• 3pm-5pm
• 6pm-8pm

All sessions will be video recorded and made available to all attendees as soon as possible, hopefully soon after each 2hr session.

If some sessions are not at a convenient time due to different time zones, attendees are encouraged to join as many of the live broadcasts as possible. For example, attendees from North America may be able to join the live sessions from 3pm-5pm and 6pm-8pm, and then catch up with the 12pm-2pm recorded session once it is uploaded. By joining any live sessions that are possible will allow attendees to benefit from asking questions and having discussions, rather than just watching prerecorded sessions.

At the start of the first day, we will ensure that everyone is comfortable with how Zoom works, and we’ll discuss the procedure for asking questions and raising comments.

Although not strictly required, using a large monitor or preferably even a second monitor will make the learning experience better, as you will be able to see my RStudio and your own RStudio simultaneously.

All the sessions will be video recorded, and made available immediately on a private video hosting website. Any materials, such as slides, data sets, etc., will be shared via GitHub.

Assumed quantitative knowledge

We assume familiarity with inferential statistics concepts like hypothesis testing and statistical significance, and some practical experience with commonly used methods like linear regression, correlation, or t-tests. Most or all of these concepts and methods are covered in a typical undergraduate statistics courses in any of the sciences and related fields.

Assumed computer background

R experience is desirable but not essential. Although we will be using R extensively, all the code that we use will be made available, and so attendees will just need to copy and paste and add minor modifications to this code. Attendees should install R and RStudio and some R packages on their own computers before the workshops, and have some minimal familiarity with the R environment.

Equipment and software requirements

A computer with a working version of R or RStudio is required. R and RStudio are both available as free and open
source software for PCs, Macs, and Linux computers. In addition to R and RStudio, some R packages, particularly brms, are required. Instructions on how to install R/RStudio and all required R packages will be provided before the course begins.

UNSURE ABOUT SUITABLILITY THEN PLEASE ASK oliverhooker@prstatistics.com

Assumed quantitative knowledge

Coming soon..

Assumed computer background

Coming soon..

Equipment and software requirements

Attendees will need to install/update R/RStudio and various additional R packages.

This can be done on Macs, Windows, and Linux.

R – https://cran.r-project.org/

RStudio – https://www.rstudio.com/products/rstudio/download/

PLEASE READ – CANCELLATION POLICY

Cancellations are accepted up to 28 days before the course start date subject to a 25% cancellation fee. Cancellations later than this may be considered, contact oliverhooker@prstatistics.com. Failure to attend will result in the full cost of the course being charged. In the unfortunate event that a course is cancelled due to unforeseen circumstances a full refund of the course fees will be credited.

If you are unsure about course suitability, please get in touch by email to find out more

info@clovertraining.co.uk

COURSE PROGRAMME

Wednesday 19th – Classes from 12:00 to 20:00

Topic 1: We will begin with a overview of what Bayesian data analysis is in essence and how it fits into statistics as it practiced generally. Our main point here will be that Bayesian data analysis is effectively an alternativeV school of statistics to the traditional approach, which is referred to variously as the classical, or sampling theory based, or frequentist based approach, rather than being a specialized or advanced statistics topic. However, there is no real necessity to see these two general approaches as being mutually exclusive and in direct competition, and a pragmatic blend of both approaches is entirely possible.

Topic 2: Introducing Bayes’ rule. Bayes’ rule can be described as a means to calculate the probability of causes
from some known effects. As such, it can be used as a means for performing statistical inference. In this section
of the course, we will work through some simple and intuitive calculations using Bayes’ rule. Ultimately, all of
Bayesian data analysis is based on an application of these methods to more complex statistical models, and so
understanding these simple cases of the application of Bayes’ rule can help provide a foundation for the more
complex cases.

Topic 3: Bayesian inference in a simple statistical model. In this section, we will work through a classic statistical inference problem, namely inferring the number of red marbles in an urn of red and black marbles, or equivalent problems. This problem is easy to analyse completely with just the use of R, but yet allows us to delve into all the key concepts of all Bayesian statistics including the likelihood function, prior distributions, posterior distributions, maximum a posteriori estimation, high posterior density intervals, posterior predictive intervals, marginal likelihoods, Bayes factors, model evaluation of out-of-sample generalization.

Thursday 20th – Classes from 12:00 to 20:00

Topic 1: We will begin with a overview of what Bayesian data analysis is in essence and how it fits into statistics as it practiced generally. Our main point here will be that Bayesian data analysis is effectively an alternative school of statistics to the traditional approach, which is referred to variously as the classical, or sampling theory based, or frequentist based approach, rather than being a specialized or advanced statistics topic. However, there is no real necessity to see these two general approaches as being mutually exclusive and in direct competition, and a pragmatic blend of both approaches is entirely possible.

Topic 2: Introducing Bayes’ rule. Bayes’ rule can be described as a means to calculate the probability of causes
from some known effects. As such, it can be used as a means for performing statistical inference. In this section
of the course, we will work through some simple and intuitive calculations using Bayes’ rule. Ultimately, all of
Bayesian data analysis is based on an application of these methods to more complex statistical models, and so
understanding these simple cases of the application of Bayes’ rule can help provide a foundation for the more
complex cases.

Topic 3: Bayesian inference in a simple statistical model. In this section, we will work through a classic statistical inference problem, namely inferring the number of red marbles in an urn of red and black marbles, or equivalent problems. This problem is easy to analyse completely with just the use of R, but yet allows us to delve into all the key concepts of all Bayesian statistics including the likelihood function, prior distributions, posterior Distributions, maximum a posteriori estimation, high posterior density intervals, posterior predictive intervals, marginal likelihoods, Bayes factors, model evaluation of out-of-sample generalization.

Course Instructor

    • Dr. Mark Andrews

    Works At
    Senior Lecturer, Psychology Department, Nottingham Trent University, England

    • Teaches
    • Free 1 day intro to r and r studio (FIRR)
    • Introduction To Statistics Using R And Rstudio (IRRS03)
    • Introduction to generalised linear models using r and rstudio (IGLM)
    • Introduction to mixed models using r and rstudio (IMMR)
    • Nonlinear regression using generalized additive models (GAMR)
    • Introduction to hidden markov and state space models (HMSS)
    • Introduction to machine learning and deep learning using r (IMDL)
    • Model selection and model simplification (MSMS)
    • Data visualization using gg plot 2 (r and rstudio) (DVGG)
    • Data wrangling using r and rstudio (DWRS)
    • Reproducible data science using rmarkdown, git, r packages, docker, make & drake, and other tools (RDRP)
    • Introduction/fundamentals of bayesian data analysis statistics using R (FBDA)
    • Bayesian data analysis (BADA)
    • Bayesian approaches to regression and mixed effects models using r and brms (BARM)
    • Introduction to stan for bayesian data analysis (ISBD)
    • Introduction to unix (UNIX01)
    • Introduction to python (PYIN03)
    • Introduction to scientific, numerical, and data analysis programming in python (PYSC03)
    • Machine learning and deep learning using python (PYML03)
    • Python for data science, machine learning, and scientific computing (PDMS02)

     

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Details

Start:
19th May 2021
End:
20th May 2021
Cost:
£275.00
Event Category:

Venue

Delivered remotely (United Kingdom)
Western European Time, United Kingdom + Google Map